GIS

Vector Borne Disease Surveillance Workshop for State Based Health Officials

The Second Vector Borne Disease Surveillance Workshop

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On June 18 & 19, 2019, eight state based health officials took the second Vector Borne Disease Surveillance workshop in Providence, Rhode Island. This was the second of two 2-day workshops aimed specifically at tackling the spread of diseases like Dengue fever, West Nile and Zika viruses. As with the first one, this was a Community Health Maps training specifically designed to demonstrate how to collect and work with geographic data related to vector borne diseases, i.e. those that are transmitted to humans via other animals such as mosquitoes. Attendees represented health departments in: Colorado, Georgia, Kansas, Louisiana, Mississippi, New Mexico, Virginia and Guam.Again this workshop was a team effort. The training was organized by the Association of State and Territorial Health Officials (ASTHO). Participants attendance was funded by CDC’s National Center for Emerging and Zoonotic Infectious Diseases. Travel for the trainers was funded by the National Library of Medicine, (funding for the workshop is provided under a sub-award from the National Library of Medicine to ICF International). This particular CHM workshop was taught in conjunction with ASTHO’s State Environmental Health Directors (SEHD) Peer Network Annual Meeting.After an introduction to the Community Health Maps project - it's origins, workflow and examples of past projects - participants learned to create a data collection form and use their smartphones to map features (trees, signs, benches etc...) around the conference site using Fulcrum.For the remainder of the first day, the group took the data they collected earlier and imported into QGIS. In this section they became familiar with QGIS and how to symbolize layers and make a print map.IMG_-bb3hhdIn addition to the data collected on site, we worked with mosquito data acquired courtesy of Dr. Chris Barker  covering Madera County, CA. The data included mosquito trap results over five years, virus testing, mosquito biting complaints, storm drains, parcel boundaries, roads and a hypothetical case of Dengue fever.The second day focused on generating vector borne disease surveillance products. The participants:A) generated trend graphs of mosquito populations through time via the QGIS Data Plotly plugin,unnamed-5.jpgB) generated heatmaps of mosquito populations,heatmapsC) calculated the minimum infection rate per year for West Nile and St. Louis Encephalitis viruses,mirD) identified potential mosquito sources to be inspected (storm drains) using a combination of a buffer operation (done against mosquito complaints with the distance  the species is known to be able to travel) and select by location against storm drains,stormdrainstobeinspected (1)E) identified parcels at risk due to their proximity to a fictional outbreak of Dengue Fever,denguefeverand F) learned to animate temporal data using the QGIS Time Manager plugin. Here the mosquito population (heatmap) is being animated weekly for the year 2018 with mosquito management zones be displayed.HouseCallAnimationHeatMapAll participants received official QGIS certificates for their participation.These workshop materials will part of the suite of https://communityhealthmaps.nlm.nih.gov/resources/ available through the Community Health Maps program in the near future.If you are interested in having this taught for you or your colleagues contact Kurt Menke (kurt@birdseyeviewgis.com)

QGIS 3 Released!

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On February 23rd QGIS 3 was formally released. Since then the developers have been working on completing installers for Windows, Mac and Linux. As of yesterday the software is ready to be installed on every operating system! To install it you can visit the QGIS Download page.QGIS VERSIONSQGIS always has two main versions available. There is the long-term release, which is the most stable because it is supported for one calendar year. In addition there is always a latest release. QGIS 3 falls into this latter category, it is the latest release. At the moment the long-term release is version 2.18. The latest release is still considered stable, but a new one comes out every 4 months.WHICH VERSION TO CHOOSE?If you want to have one version of QGIS without having to worry about updates, use the long-term release (2.18). If you want to experience all the new features that come with version 3 you will want the latest release (3.0). As mentioned last month, version 3 is a major new release with a lot of changes and new features.On Windows machines you can have both. You can easily install both versions of QGIS side by side with no conflicts by using the OSGeo4W Network Installer. On Mac and Linux machines you can only have one version, so you need to choose.QGIS 3QGIS 3 is fast, stable and feature rich. The main issue for many users is that not all Plugins have yet  to be ported to QGIS 3. This is because this responsibility falls onto the individual plugin authors. With that said, at last count there were already 117 plugins available for version 3. 

CHM Has a Busy Fall with Workshops and Storms!

We had a busy fall giving three workshops in September and October. First Community Health Maps traveled to Spokane Washington to conduct a half day technical workshop at the National Tribal Forum for Excellence in Community Health Practice.img_1639This event was organized by the Northwest Portland Area Indian Health Board and supported by the Robert Wood Johnson Foundation. We weren't certain who or how many would attend, and I expect attendees weren't entirely sure what Community Health Mapping was all about either. However, it turned out to be a very engaged group representing tribes from many regions of the country. Within a few hours everyone was able to:

  • Create a field data collection form in Fulcrum
  • Collect some data around the conference center on their smartphones/tablets
  • Make a map of their data in Carto
  • Learn how to bring the data into QGIS

This was a typical CHM workshop with most never having done any mapping work before. As such it was a very empowering experience for the participants to learn how to use this technology to map their community in just a few short hours.From there we traveled to Honolulu, Hawai'i to give a workshop organized by Papa Ola Lokahi. There were two hurricanes (Lester and Madeline) heading towards the islands. Fortunately they both veered off and didn't cause any damage or disruptions! The attendees came with a plethora of ideas on how mapping could fit into their work including:A) tracking scholarship recipients of the Native Hawaiian Health Scholarships program,B) supporting the Native Hawaiian Cancer Network,C) mapping Dr. Ben Young’s research on historical tracking of Native Hawaiian Health professionals,D) mapping Native Hawaiian Homelands to provide resource data to providers and community members, andE) use the CHM "train the trainer" model to increase ongoing trainings for service providers including community health outreach workers and patient community navigators in Hawai'i.img_1004After a brief break we headed to Seattle, Washington, again there were two separate storms including, the remnants of Typhoon Songda, bearing down on the region threatening to disrupt power and services! Again fortunately the storms didn't make a direct hit on the area and the workshop proceeded on schedule.We went to train students in the capstone course of the Community Oriented Public Health Practice Program at the University of Washington. This is our second year supporting this program. The first year was a huge success with two students attending the APTR Conference and presenting their work.Like last year we had  a full house with students eager to learn about community mapping. Both first year and second year students were in attendance. Several second year students will submit proposals for consideration, to receive a stipend and support for using Community Health Maps in their capstone projects. Jamie Smeland is the first of the group to be awarded the stipend for her capstone project entitled, "Honoring the Collective Wisdom: Documenting a Cross-Racial and Intergenerational Movement to Shift Power to Youth and Parent Leaders to Improve Educational and Health Outcomes for Students of Color in South Seattle & South King County." We look forward to working with these students in the coming months.IMG_2178.JPGIn the near future we will be offering an updated set of Community Health Mapping labs and a platform for CHM webinars. Stay tuned! In the meantime if you are interested in Community Health Maps and/or receiving CHM training contact John Scott (jcscott at cpsc.com) for more details.

GIS as an Educational Tool at MUSC

Submitted by Jennifer RewolinskiDr. Deborah Williamson is an Associate Professor in the College of Nursing at the Medical University of South Carolina (MUSC), Charleston. Dr. Williamson, Community Health Maps (CHM) and MUSC have partnered in providing training that integrates GIS and CHM tools for a high school Teen Health Leadership Program. Dr. Williamson has worked with both community members and students.wilmsndDr. Williamson believes that, “GIS has the potential to substantially increase community engagement and is truly a concept of the neighborhood taking control of their data.” She notes that while researchers might study a community, that a community’s input is essential to understanding the cultural and environmental context surrounding health issues: “GIS mapping puts the community members on more of a level playing field with their research partners.” GIS can empower and educate community members to identify their key issues, to become a part of an analysis, and to provide solutions. When communities are given the opportunity to map their own health, discovery, and awareness, positive changes can result.  When a community feels it has more of a say through engagement with GIS, or communication with a map, intervention is more likely to be effective.For the past three semesters, Dr. Williamson has used GIS in her own classroom as a capstone project for population health students.  They, “find it fun and can take it with them into other settings, it fits into the world of new technology, and it takes people to the next step of looking at health issues.” Mapping offers a different way to help students visualize Social Determinants of Health and to make the connection between what population health is, and the factors that promote or deter it.IMG_9585_v2Finally, Dr. Williamson sees GIS as bi-directional: it supports visualizing gaps and assets while also providing the ability to disseminate and build on information via intervention programs to improve health outcomes and strengthen communities. GIS is also broadly applicable to almost any discipline and easily used by those with little expertise. “Presenting raw data to a community or students doesn’t mean a lot,” Dr. Williamson comments, “but when that same data is aggregated visually it instantly communicates a message to any audience.” GIS is clearly suitable as an effective educational tool in the classroom and in communities.CHM thanks Dr. Williamson for her continued collaboration and time spent advancing the CHM program through use of the CHM tools at MUSC. CHM values our partnership with MUSC and hope that the future is as mutually beneficial as the past few years.Field data collection for the CHM workflow bridges the divide between learning in a classroom and experiencing conditions in a community. For the capstone project, students use CHM labs and parts of the CHM workflow, including phone data collection with iForm or Fulcrum, integration of the data into QGIS, and presenting the data with Carto or Google Maps. Dr. Williamson’s students often upload their data from iForm to Google Maps because of its familiarity and easy access.One student project involved identifying migrant camps as a community in need, and assessing the community through surveys and key informant interviews.  When the data showed that migrant workers often lack knowledge of health information and access to healthcare services, students mapped locations of migrant camps near Charleston, SC in relation to urgent care facilities and shared the data with the migrant outreach workers from a local community health center. Later, an intervention was developed to provide hands on CPR and first aid instruction to 60 workers. This project displays successful application of CHM tools in an educational and community context resulting in an intervention that may offer real change.CharlestonMigrantMap.png

Discover QGIS - A new QGIS workbook!

Two years ago, myself and several colleagues authored the GeoAcademy which is the first ever GIS curriculum based on a national standard – the U.S. Department of Labor’s Geospatial Competency Model (GTCM). The GTCM consists of the knowledge, skills and abilities needed to be a working GIS professional.  Our team was honored with the 2015 GeoForAll Educator of the Year award for this effort. The GeoAcademy consists of 5 complete college courses.

  • Introduction to Geospatial Technology Using QGIS
  • Spatial Analysis Using QGIS
  • Data Acquisition and Management Using QGIS
  • Cartography Using QGIS and InkScape
  • Remote Sensing Using QGIS and GRASS

This winter I converted the curriculum to fit into a convenient workbook format with Locate Press. The workbook is called Discover QGIS.As you may be aware, QGIS is evolving rapidly. A new version is released every 4 months!  Due to this rapid development pace each spring a long-term release (LTR) is created. The LTR version is supported for a calendar year and is better for production environments. Originally written for QGIS 2.4, the GeoAcademy material in this workbook has been updated for use with QGIS 2.14 LTR. It therefore represents the most up-to-date version of the GeoAcademy curriculum. In addition to working with QGIS, it also includes exercises doing analysis tasks with the powerful GRASS GIS software, both alone and via the GRASS QGIS plugin. The cartography section includes exercises with InkScape. Here you'll learn how to begin a map in QGIS and use InkScape to finish a publication quality map.At the moment the digital version of the workbook is available as a Preview Edition for only $24.99. Purchasing this preview entitles you to the full version when it is released. There are just a few formatting issues to resolve.This book will be a great resource for Community Health Mappers wanting to build their skills. The 470 page workbook comes with exercise data, challenge exercises and solution files!Discover QGIS

APTR: Teaching Prevention - Albuquerque, NM

Community Health Mappers had a strong presence at the recent APTR Teaching Prevention conference held in Albuquerque, New Mexico last week.APTR Teaching Prevention Conference LogoThe theme of the conference was Preparing Students to Address Emerging Issues, and four students presented work incorporating the CHM mapping protocol. Medical University of South Carolina (MUSC) College of Nursing students Caitlin Baker and Carleigh Fox presented a  poster on their project "A Diabetes Epidemic in Rural South Carolina." They used mobile devices to conduct a windshield survey of a rural South Carolina community to better understand the diabetes epidemic.Caitlin Baker and Carleigh Fox Presenting at the APTR Poster SessionAmy Tseng, a student at the University of Washington's School of Public Health, presented a poster outlining her project, "Evaluating of the Wellness for Asian Pacific Americans Using GIS." This is her capstone project in the Community Oriented Public Health Practice program . One question she is attempting to answer is whether there is a relationship between having a sense of community and the density of Asian Pacific Americans  in a given neighborhood. She is utilizing QGIS and Fulcrum to help answer this question.Amy Tseng (UW) Presenting at the APTR Poster SessionChristina Yantsides, also in the School of Public Health at the University of Washington, presented her capstone project, "Bicycle Injuries and Fatalities: A GIS Mapping Project" in both a the Sunday afternoon lightning session, and the Sunday evening poster session. She is using QGIS to help identify clusters of bicycle accidents in Seattle and gain a better understanding of the causal factors.Christina Yantsides (UW) Presenting at the APTR Poster SessionThe final morning of the conference myself, John Scott, Dr.  Deborah Williamson (MUSC) and Dana Burshell (MUSC) presented the "National Library of Medicine (NLM) Community Health Mapping Project." Often conference attendees are tired by the final morning. However, we were excited to present to a standing room only crowd of about 75 attendees! Collectively we introduced the project and the National Library of Medicine, and went on to show how successfully the project has been implemented from Hawai'i to South Carolina. I heard several audible gasps from the audience as we presented examples. This caused me reflect on the fact that mapping and GIS is simply what I do all day long, however, to many it is still a new and exciting tool. We finished with a quick live demo of downloading data from Fulcrum and uploading it into CartoDB to show how quick and easy it is.John Scott, Deborah Williamson, Kurt Menke and Dana Burshell Before Presenting at APTRCollectively it was a very successful demonstration of how Community Health Mapping can be used by community organizations, educators and students. APTR was a very interesting conference and a great fit for Community Health Mapping. Several conference organizers suggested we teach a Community Health Mapping workshop at next years conference! Looks like we will be back!IMG_9778_v2

Community Health Maps Conducts a Training in the South Carolina Lowcountry

Recently Kurt Menke headed to Charleston, South Carolina to train several groups how to map their communities. This region is also known as the 'lowcountry' due to the flat, low elevation geography. The training was hosted by the Medical University of South Carolina (MUSC) and included people from Communities in Schools - Charleston (CISC) and the MUSC College of Nursing.MUSC Community Health Mapping Training SessionFirst everyone learned how collect GPS field data with iPads. For this we used a new app named iForm. This app was used in lieu of EPI Collect, which no longer supported on iOS. (The next blog post will cover iForm in more detail.) iForm is an app very similar to the Android app ODK Collect, allowing a custom data collection form to be developed. To practice we collected bike rack locations  and seating areas around the MUSC campus. The afternoon was spent working with everyone's  data. GPS data points were brought into QGIS and shown against some local Charleston GIS data layers.MUSC Data Points in QGISThe points were also uploaded to CartoDB. CartoDB is another new component of the Community Health Mapping workflow. It has become more intuitive than GIS Cloud and worked really well. (Note: There will be a post on using CartoDB soon too.)The following day I visited CISC's Derek Toth and three of his students at St. John's High School on John's Island, SC. Over a working lunch Mr. Toth showed students how easy it is to collect GPS points with their iPhones. We collecting several points while walking around the campus.IMG_5459Afterwards we went back inside and showed them how to upload the points into CartoDB and make a map. The figure below shows the results of 45 minutes worth of work! Click on the map to open the live version.St Johns High School MapThis spring these three juniors will be leading the charge to map their island!  They will be presenting their work to the National Library of Medicine later this spring. I look forward to seeing their work!St. Johns High School Mapping Team